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R. norvegicus Gene: Hdac11 - ENSRNOG00000006824 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000006824
NameHdac11
Descriptionhistone deacetylase 11 [Source:RGD Symbol;Acc:1311706]
OrganismRattus norvegicus (rat)
Synonym(s)hdac11_predicted, loc297453
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
215
  • 215
  • 984
99.22
  • 99.22
  • 96.42
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.08e3
  • 1.08e3
  • 1.45e3
96.06
  • 96.06
  • 94.74
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.79e3
  • 1.79e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.86e3
  • 1.86e3
  • 7.13e3
93.23
  • 93.23
  • 74.02
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.17e3
  • 2.17e3
92.10
  • 92.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.14e3
  • 4.14e3
  • 6.43e3
  • 7.37e3
84.92
  • 84.92
  • 76.58
  • 73.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
4.98e3
  • 4.98e3
81.87
  • 81.87
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.27e3
  • 5.27e3
80.81
  • 80.81
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
5.51e3
  • 5.51e3
  • 5.55e3
79.94
  • 79.94
  • 79.78
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
5.90e3
  • 5.90e3
78.51
  • 78.51
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
8.55e3
  • 8.55e3
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
8.89e3
  • 8.89e3
67.63
  • 67.63
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.25e3
  • 9.25e3
66.29
  • 66.29
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
9.50e3
  • 9.50e3
65.41
  • 65.41
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.58e3
  • 9.58e3
65.11
  • 65.11
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.67e3
  • 9.67e3
64.77
  • 64.77
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.24
  • 63.24
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.11
  • 63.11
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.74
  • 57.74
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.12
  • 55.12
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.60
  • 47.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000006824.

Cross-references

EnsemblENSRNOG00000006824 (Hdac11)
RGD1311706 (Hdac11)
EMBLAABR07061420, BC166430, CH473957
Uniprot/SPTREMBLB2GUW3, B2GUW3_RAT

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