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R. norvegicus Gene: Thumpd3 - ENSRNOG00000006941 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000006941
NameThumpd3
DescriptionTHUMP domain containing 3 [Source:RGD Symbol;Acc:1560852]
OrganismRattus norvegicus (rat)
Synonym(s)loc500288, rgd1560852, rgd1560852_predicted
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.83e3
  • 1.83e3
  • 2.78e3
93.34
  • 93.34
  • 89.89
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
2.96e3
  • 2.96e3
89.22
  • 89.22
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.12e3
  • 3.12e3
88.65
  • 88.65
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.25e3
  • 3.25e3
88.15
  • 88.15
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.38e3
  • 3.38e3
87.69
  • 87.69
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.51e3
  • 3.51e3
87.23
  • 87.23
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.52e3
  • 3.52e3
87.16
  • 87.16
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.74e3
  • 3.74e3
86.38
  • 86.38
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.92e3
  • 3.92e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.98e3
  • 3.98e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
4.20e3
  • 4.20e3
84.71
  • 84.71
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.38e3
  • 4.38e3
84.06
  • 84.06
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.94e3
  • 4.94e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.19e3
  • 5.19e3
  • 7.28e3
81.08
  • 81.08
  • 73.47
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
5.20e3
  • 5.20e3
81.05
  • 81.05
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.30e3
  • 5.30e3
80.71
  • 80.71
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
5.30e3
  • 5.30e3
80.70
  • 80.70
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
5.65e3
  • 5.65e3
  • 5.76e3
  • 6.52e3
79.40
  • 79.40
  • 79.02
  • 76.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
6.12e3
  • 6.12e3
77.72
  • 77.72
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
7.06e3
  • 7.06e3
74.30
  • 74.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Theria13 species15 genesCompare expression
Mammalia14 species16 genesCompare expression
Amniota16 species18 genesCompare expression
Tetrapoda17 species19 genesCompare expression
Euteleostomi18 species20 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000006941.

Cross-references

EnsemblENSRNOG00000006941 (Thumpd3)
RGD1560852 (Thumpd3)
EMBLAABR07061801, CH473957
Uniprot/SPTREMBLD3ZSV7, D3ZSV7_RAT

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