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R. norvegicus Gene: Slc17a8 - ENSRNOG00000007581 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000007581
NameSlc17a8
Descriptionsolute carrier family 17 (vesicular glutamate transporter), member 8 [Source:RGD Symbol;Acc:628870]
OrganismRattus norvegicus (rat)
Synonym(s)q8k1q1, vglut3
Orthologs(s)25 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
  • 1.31e4
57.18
  • 57.18
  • 52.18
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
  • 1.46e4
54.98
  • 54.98
  • 46.97
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.47
  • 43.47
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 1.66e4
43.35
  • 43.35
  • 39.50
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.71
  • 41.71
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
36.75
  • 36.75
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.75e4
  • 1.75e4
36.23
  • 36.23
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.42
  • 35.42
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.81e4
  • 1.81e4
34.21
  • 34.21
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.02e4
  • 2.02e4
26.24
  • 26.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000007581.

Paralogs (same species)

Cross-references

EnsemblENSRNOG00000007581 (Slc17a8)
RGD628870 (Slc17a8)
EMBLAJ491795, AY117026
Uniprot/SWISSPROTQ7TSF2, VGLU3_RAT

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