R. norvegicus Gene: Timp4 - ENSRNOG00000007955 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000007955
NameTimp4
Descriptiontissue inhibitor of metalloproteinase 4 [Source:RGD Symbol;Acc:69077]
OrganismRattus norvegicus (rat)
Synonym(s)loc680130, timp-4, timp4_mapped
Orthologs(s)15 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.39e3
  • 2.39e3
91.30
  • 91.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.82e3
  • 3.82e3
86.10
  • 86.10
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.59e3
  • 4.59e3
83.27
  • 83.27
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
5.34e3
  • 5.34e3
80.56
  • 80.56
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
6.13e3
  • 6.13e3
77.68
  • 77.68
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.11e3
  • 9.11e3
  • 9.13e3
66.80
  • 66.80
  • 66.73
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
61.17
  • 61.17
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
60.94
  • 60.94
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.66
  • 58.66
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.16e4
58.59
  • 58.59
  • 57.75
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.47
  • 51.47
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.70
  • 49.70
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
47.36
  • 47.36
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.26
  • 45.26
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
  • 1.65e4
44.49
  • 44.49
  • 39.75
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.64e4
  • 1.64e4
40.34
  • 40.34
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.84e4
  • 1.84e4
32.84
  • 32.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000007955.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000007955.

Cross-references

EnsemblENSRNOG00000007955 (Timp4)
RGD69077 (Timp4)
EMBLAABR03031919
Uniprot/SWISSPROTP81556, TIMP4_RAT

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