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R. norvegicus Gene: Tmed1 - ENSRNOG00000008037 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000008037
NameTmed1
Descriptiontransmembrane p24 trafficking protein 1 [Source:RGD Symbol;Acc:1311679]
OrganismRattus norvegicus (rat)
Synonym(s)il1rl1l, loc315461, mgc108769
Orthologs(s)31 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.02e3
  • 2.02e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.16e3
  • 2.16e3
92.14
  • 92.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.65e3
  • 2.65e3
90.36
  • 90.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
2.78e3
  • 2.78e3
  • 4.82e3
  • 5.00e3
89.87
  • 89.87
  • 82.46
  • 81.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.63e3
  • 3.63e3
86.79
  • 86.79
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.73e3
  • 3.73e3
86.41
  • 86.41
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
4.68e3
  • 4.68e3
82.96
  • 82.96
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.69e3
  • 4.69e3
82.90
  • 82.90
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.71e3
  • 4.71e3
82.83
  • 82.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.82e3
  • 4.82e3
  • 8.54e3
82.43
  • 82.43
  • 68.90
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.95e3
  • 4.95e3
81.98
  • 81.98
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.46e3
  • 6.46e3
76.47
  • 76.47
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.84e3
  • 6.84e3
75.08
  • 75.08
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
7.07e3
  • 7.07e3
74.26
  • 74.26
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
7.22e3
  • 7.22e3
73.68
  • 73.68
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
7.24e3
  • 7.24e3
73.65
  • 73.65
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
7.26e3
  • 7.26e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.33e3
  • 7.33e3
  • 9.74e3
73.30
  • 73.30
  • 64.51
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
7.43e3
  • 7.43e3
72.94
  • 72.94
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.95e3
  • 7.95e3
  • 8.35e3
71.04
  • 71.04
  • 69.60
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
8.49e3
  • 8.49e3
69.06
  • 69.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression
Bilateria24 species31 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000008037.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression
Opisthokonta4 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000008037.

Cross-references

EnsemblENSRNOG00000008037 (Tmed1)
RGD1311679 (Tmed1)
EMBLBC091167
Uniprot/SWISSPROTQ5BK85, TMED1_RAT

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