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R. norvegicus Gene: Ubr3 - ENSRNOG00000008616 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000008616
NameUbr3
Descriptionubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
OrganismRattus norvegicus (rat)
Synonym(s)loc311115, rgd1565257
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.77e3
  • 1.77e3
93.55
  • 93.55
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.05e3
  • 2.05e3
92.55
  • 92.55
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.30e3
  • 3.30e3
87.98
  • 87.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.77e3
  • 3.77e3
86.27
  • 86.27
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.05e3
  • 4.05e3
  • 1.21e4
85.24
  • 85.24
  • 56.00
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
4.16e3
  • 4.16e3
  • 4.45e3
  • 7.92e3
84.85
  • 84.85
  • 83.81
  • 71.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.67e3
  • 4.67e3
  • 5.41e3
82.99
  • 82.99
  • 80.29
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.59e3
  • 5.59e3
79.65
  • 79.65
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.01e3
  • 6.01e3
78.11
  • 78.11
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
6.48e3
  • 6.48e3
76.40
  • 76.40
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
6.48e3
  • 6.48e3
76.39
  • 76.39
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
6.66e3
  • 6.66e3
75.74
  • 75.74
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
6.67e3
  • 6.67e3
75.69
  • 75.69
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.80e3
  • 6.80e3
75.22
  • 75.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
7.13e3
  • 7.13e3
74.04
  • 74.04
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
7.83e3
  • 7.83e3
71.49
  • 71.49
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
8.01e3
  • 8.01e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.26e3
  • 8.26e3
  • 8.87e3
69.92
  • 69.92
  • 67.70
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.68e3
  • 8.68e3
68.37
  • 68.37
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
8.90e3
  • 8.90e3
67.59
  • 67.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires4 species4 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Amniota10 species10 genesCompare expression
Bilateria15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000008616.

Cross-references

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