R. norvegicus Gene: Atg4c - ENSRNOG00000008767 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000008767
NameAtg4c
Descriptionautophagy related 4C, cysteine peptidase [Source:RGD Symbol;Acc:1598323]
OrganismRattus norvegicus (rat)
Synonym(s)loc313391
Orthologs(s)19 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
5.41e3
  • 5.41e3
  • 5.43e3
  • 9.21e3
80.30
  • 80.30
  • 80.21
  • 66.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.21e3
  • 6.21e3
  • 2.21e4
77.36
  • 77.36
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.33e3
  • 6.33e3
  • 7.35e3
76.94
  • 76.94
  • 73.24
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.67e3
  • 6.67e3
75.71
  • 75.71
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
7.40e3
  • 7.40e3
73.04
  • 73.04
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
7.57e3
  • 7.57e3
72.44
  • 72.44
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
7.58e3
  • 7.58e3
72.38
  • 72.38
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
8.25e3
  • 8.25e3
69.97
  • 69.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.75e3
  • 8.75e3
  • 2.26e4
68.14
  • 68.14
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
8.86e3
  • 8.86e3
67.73
  • 67.73
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.04e3
  • 9.04e3
67.06
  • 67.06
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
9.27e3
  • 9.27e3
66.24
  • 66.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.32e3
  • 9.32e3
66.06
  • 66.06
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.40e3
  • 9.40e3
65.74
  • 65.74
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.50e3
  • 9.50e3
65.40
  • 65.40
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
9.67e3
  • 9.67e3
64.78
  • 64.78
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.99e3
  • 9.99e3
63.61
  • 63.61
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
9.99e3
  • 9.99e3
63.60
  • 63.60
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.22
  • 63.22
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.28
  • 56.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000008767.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000008767.

Cross-references

EnsemblENSRNOG00000008767 (Atg4c)
RGD1598323 (Atg4c)
EMBLAABR07049347
Uniprot/SPTREMBLF1M3M0, F1M3M0_RAT

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