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R. norvegicus Gene: Ankrd42 - ENSRNOG00000009664 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000009664
NameAnkrd42
Descriptionankyrin repeat domain 42 [Source:RGD Symbol;Acc:1310789]
OrganismRattus norvegicus (rat)
Synonym(s)ankrd42_predicted, loc293117, rgd1310789
Orthologs(s)9 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.28e3
  • 3.28e3
  • 3.50e3
88.04
  • 88.04
  • 87.25
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.83e3
  • 6.83e3
  • 1.02e4
75.11
  • 75.11
  • 62.71
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.18e3
  • 8.18e3
  • 1.00e4
70.22
  • 70.22
  • 63.55
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
8.73e3
  • 8.73e3
68.21
  • 68.21
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
8.75e3
  • 8.75e3
68.11
  • 68.11
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
8.83e3
  • 8.83e3
67.83
  • 67.83
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
8.83e3
  • 8.83e3
67.82
  • 67.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
9.49e3
  • 9.49e3
65.42
  • 65.42
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.62e3
  • 9.62e3
64.97
  • 64.97
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
9.92e3
  • 9.92e3
  • 1.04e4
  • 1.07e4
63.87
  • 63.87
  • 61.96
  • 61.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
62.55
  • 62.55
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
61.13
  • 61.13
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
60.93
  • 60.93
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
60.48
  • 60.48
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.30
  • 56.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.27
  • 56.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.74
  • 54.74
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.28
  • 54.28
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
48.94
  • 48.94
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
  • 1.45e4
47.22
  • 47.22
  • 47.14
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires4 species4 genesCompare expression
Theria5 species5 genesCompare expression
Mammalia6 species6 genesCompare expression
Amniota8 species8 genesCompare expression
Tetrapoda9 species9 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000009664.

Cross-references

EnsemblENSRNOG00000009664 (Ankrd42)
RGD1310789 (Ankrd42)
EMBLAABR07004792, AABR07004793, AABR07004794, CH473956
Uniprot/SPTREMBLD3ZA25, D3ZA25_RAT

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