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R. norvegicus Gene: Pgm1 - ENSRNOG00000009889 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000009889
NamePgm1
Descriptionphosphoglucomutase 1 [Source:RGD Symbol;Acc:3316]
OrganismRattus norvegicus (rat)
Synonym(s)pgm 1
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
72.8
  • 72.8
99.74
  • 99.74
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
126
  • 126
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
639
  • 639
97.68
  • 97.68
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
885
  • 885
96.78
  • 96.78
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
1.13e3
  • 1.13e3
  • 1.16e3
  • 1.21e3
95.90
  • 95.90
  • 95.77
  • 95.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.45e3
  • 2.45e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.60e3
  • 2.60e3
90.54
  • 90.54
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.16e3
  • 3.16e3
  • 3.75e3
88.47
  • 88.47
  • 86.35
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.24e3
  • 3.24e3
  • 5.16e3
88.20
  • 88.20
  • 81.21
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.51e3
  • 3.51e3
87.23
  • 87.23
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.36e3
  • 4.36e3
  • 4.44e3
84.10
  • 84.10
  • 83.82
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.55e3
  • 4.55e3
83.45
  • 83.45
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.94e3
  • 4.94e3
82.02
  • 82.02
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.36e3
  • 5.36e3
80.47
  • 80.47
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
5.36e3
  • 5.36e3
80.46
  • 80.46
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
5.47e3
  • 5.47e3
80.09
  • 80.09
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.91e3
  • 5.91e3
78.48
  • 78.48
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
6.92e3
  • 6.92e3
74.80
  • 74.80
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
7.78e3
  • 7.78e3
71.66
  • 71.66
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
8.62e3
  • 8.62e3
68.59
  • 68.59
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
9.23e3
  • 9.23e3
66.39
  • 66.39
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.63e3
  • 9.63e3
  • 1.08e4
64.91
  • 64.91
  • 60.81
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000009889.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000009889.

Cross-references

EnsemblENSRNOG00000009889 (Pgm1)
RGD3316 (Pgm1)
EMBLAC121719, BC099807, CH473998
Uniprot/SPTREMBLQ499Q4, Q499Q4_RAT

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