R. norvegicus Gene: Tmem229b - ENSRNOG00000010646 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000010646
NameTmem229b
Descriptiontransmembrane protein 229B [Source:RGD Symbol;Acc:1562622]
OrganismRattus norvegicus (rat)
Synonym(s)loc503035, rgd1562622
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
3.12e3
  • 3.12e3
88.65
  • 88.65
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.32e3
  • 3.32e3
87.90
  • 87.90
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.82e3
  • 3.82e3
86.09
  • 86.09
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
6.48e3
  • 6.48e3
76.40
  • 76.40
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.01e3
  • 7.01e3
  • 7.03e3
74.48
  • 74.48
  • 74.39
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
7.18e3
  • 7.18e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
7.44e3
  • 7.44e3
72.92
  • 72.92
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
7.68e3
  • 7.68e3
  • 7.96e3
72.03
  • 72.03
  • 71.02
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
8.34e3
  • 8.34e3
69.60
  • 69.60
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
8.91e3
  • 8.91e3
67.56
  • 67.56
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.15e3
  • 9.15e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.32e3
  • 9.32e3
66.04
  • 66.04
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
9.63e3
  • 9.63e3
64.93
  • 64.93
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
9.81e3
  • 9.81e3
64.27
  • 64.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
62.95
  • 62.95
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.56
  • 61.56
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.17e4
  • 1.17e4
57.23
  • 57.23
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.22e4
56.16
  • 56.16
  • 55.82
  • 55.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
55.43
  • 55.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
  • 1.47e4
51.83
  • 51.83
  • 46.46
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000010646.

Cross-references

EnsemblENSRNOG00000010646 (Tmem229b)
RGD1562622 (Tmem229b)
EMBLAABR07064959, AABR07064960, AABR07064961, CH473947
Uniprot/SPTREMBLD4ACC3, D4ACC3_RAT

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