R. norvegicus Gene: Hmgcll1 - ENSRNOG00000011193 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000011193
NameHmgcll1
Description3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 [Source:RGD Symbol;Acc:1565090]
OrganismRattus norvegicus (rat)
Synonym(s)loc367112, rgd1565090

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.46e3
  • 7.46e3
  • 9.02e3
72.77966
  • 72.77966
  • 67.08743
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.74e3
  • 7.74e3
  • 9.84e3
71.78769
  • 71.78769
  • 64.09552
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
8.52e3
  • 8.52e3
68.90998
  • 68.90998
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
51.27771
  • 51.27771
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
49.96323
  • 49.96323
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.16362
  • 44.16362
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
43.87916
  • 43.87916
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.55808
  • 43.55808
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
42.30022
  • 42.30022
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
42.02867
  • 42.02867
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.75161
  • 41.75161
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
41.34107
  • 41.34107
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
41.18273
  • 41.18273
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.71182
  • 40.71182
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.66e4
  • 1.66e4
39.61382
  • 39.61382
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.66e4
  • 1.66e4
39.34956
  • 39.34956
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
39.14174
  • 39.14174
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.88916
  • 38.88916
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.69e4
  • 1.69e4
38.28902
  • 38.28902
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
37.09202
  • 37.09202
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.00e4
  • 2.00e4
  • 2.26e4
26.95091
  • 26.95091
  • 17.62593
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCH473954
EnsemblENSRNOG00000011193 (Hmgcll1)
RGD1565090 (Hmgcll1)
Uniprot/SWISSPROTD4A5C3, HMGC2_RAT

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