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R. norvegicus Gene: Sox10 - ENSRNOG00000011305 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000011305
NameSox10
DescriptionSRY (sex determining region Y)-box 10 [Source:RGD Symbol;Acc:3735]
OrganismRattus norvegicus (rat)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.48e3
  • 1.48e3
  • 4.62e3
94.63
  • 94.63
  • 83.17
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.30e3
  • 6.30e3
77.04
  • 77.04
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.76e3
  • 6.76e3
  • 7.81e3
75.37
  • 75.37
  • 71.56
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
7.41e3
  • 7.41e3
  • 7.51e3
73.01
  • 73.01
  • 72.65
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
7.89e3
  • 7.89e3
71.27
  • 71.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
  • 1.92e4
62.70
  • 62.70
  • 29.88
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.72
  • 51.72
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.83
  • 49.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
  • 2.06e4
49.69
  • 49.69
  • 24.81
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.23
  • 49.23
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
49.06
  • 49.06
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
48.90
  • 48.90
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
47.94
  • 47.94
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
46.43
  • 46.43
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
39.01
  • 39.01
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.71e4
  • 1.71e4
37.76
  • 37.76
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.67
  • 35.67
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.79e4
  • 1.79e4
34.81
  • 34.81
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.80e4
  • 1.80e4
34.49
  • 34.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000011305.

Cross-references

EnsemblENSRNOG00000011305 (Sox10)
RGD3735 (Sox10)
EMBLAJ001029, BC062067
Uniprot/SWISSPROTO55170, SOX10_RAT

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