R. norvegicus Gene: Psmc3 - ENSRNOG00000011414 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000011414
NamePsmc3
Descriptionproteasome 26S subunit, ATPase 3 [Source:RGD Symbol;Acc:61905]
OrganismRattus norvegicus (rat)
Synonym(s)tbp-1
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
357
  • 357
  • 380
98.70
  • 98.70
  • 98.62
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
724
  • 724
  • 1.12e3
97.37
  • 97.37
  • 95.94
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
769
  • 769
97.20
  • 97.20
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
898
  • 898
96.73
  • 96.73
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
901
  • 901
96.72
  • 96.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
957
  • 957
96.52
  • 96.52
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
976
  • 976
  • 987
96.45
  • 96.45
  • 96.41
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.04e3
  • 1.04e3
96.22
  • 96.22
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.05e3
  • 1.05e3
96.18
  • 96.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.08e3
  • 1.08e3
96.09
  • 96.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.18e3
  • 1.18e3
  • 1.29e3
  • 1.35e3
95.70
  • 95.70
  • 95.31
  • 95.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.21e3
  • 1.21e3
95.61
  • 95.61
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.22e3
  • 1.22e3
95.55
  • 95.55
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.22e3
  • 1.22e3
95.55
  • 95.55
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.25e3
  • 1.25e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.28e3
  • 1.28e3
95.35
  • 95.35
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.30e3
  • 1.30e3
95.26
  • 95.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.36e3
  • 1.36e3
95.04
  • 95.04
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.47e3
  • 1.47e3
94.65
  • 94.65
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.47e3
  • 1.47e3
94.64
  • 94.64
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.63e3
  • 1.63e3
94.07
  • 94.07
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
2.30e3
  • 2.30e3
  • 2.36e3
91.63
  • 91.63
  • 91.39
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species14 genesCompare expression
Theria14 species15 genesCompare expression
Amniota16 species17 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000011414.

Cross-references

EnsemblENSRNOG00000011414 (Psmc3)
RGD61905 (Psmc3)
EMBLAABR07052865, BC062019, CH473949
Uniprot/SPTREMBLQ6P6U2, Q6P6U2_RAT

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