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R. norvegicus Gene: Slc18a1 - ENSRNOG00000011992 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000011992
NameSlc18a1
Descriptionsolute carrier family 18 (vesicular monoamine transporter), member 1 [Source:RGD Symbol;Acc:3693]
OrganismRattus norvegicus (rat)
Synonym(s)cgat, loc684870, vat1, vmat-1, vmat1
Orthologs(s)26 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.59e3
  • 9.59e3
65.07
  • 65.07
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.11
  • 56.11
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.76
  • 52.76
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
  • 1.58e4
52.24
  • 52.24
  • 42.53
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
  • 1.54e4
51.02
  • 51.02
  • 44.06
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
49.06
  • 49.06
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.57
  • 48.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
1.45e4
  • 1.45e4
47.18
  • 47.18
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
45.62
  • 45.62
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.27
  • 43.27
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
41.44
  • 41.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
39.00
  • 39.00
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.01e4
  • 2.01e4
26.77
  • 26.77
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.10e4
  • 2.10e4
23.34
  • 23.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria23 species26 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000011992.

Paralogs (same species)

Cross-references

EnsemblENSRNOG00000011992 (Slc18a1)
RGD3693 (Slc18a1)
EMBLAABR07024952, AABR07024953
Uniprot/SPTREMBLF1LSA7, F1LSA7_RAT

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