R. norvegicus Gene: Sptlc2 - ENSRNOG00000012210 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000012210
NameSptlc2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:RGD Symbol;Acc:1305447]
OrganismRattus norvegicus (rat)
Synonym(s)loc366697, mgc124851, pomt2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.69e3
  • 1.69e3
93.84
  • 93.84
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.76e3
  • 1.76e3
93.58
  • 93.58
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
2.14e3
  • 2.14e3
92.21
  • 92.21
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
2.35e3
  • 2.35e3
91.44
  • 91.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.36e3
  • 2.36e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.70e3
  • 2.70e3
90.15
  • 90.15
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.88e3
  • 2.88e3
89.50
  • 89.50
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.26e3
  • 3.26e3
88.12
  • 88.12
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.00e3
  • 5.00e3
81.76
  • 81.76
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.28e3
  • 5.28e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.50e3
  • 5.50e3
79.94
  • 79.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
5.79e3
  • 5.79e3
  • 8.30e3
78.88
  • 78.88
  • 69.75
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.01e3
  • 6.01e3
  • 1.25e4
78.10
  • 78.10
  • 54.31
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.22e3
  • 6.22e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.33e3
  • 6.33e3
  • 7.31e3
76.93
  • 76.93
  • 73.32
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
6.44e3
  • 6.44e3
76.51
  • 76.51
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
6.62e3
  • 6.62e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.83e3
  • 6.83e3
75.10
  • 75.10
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
7.48e3
  • 7.48e3
72.73
  • 72.73
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.43e3
  • 8.43e3
  • 1.40e4
69.27
  • 69.27
  • 48.85
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
  • 1.44e4
47.51
  • 47.51
  • 47.39
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAABR07065137
EnsemblENSRNOG00000012210 (Sptlc2)
RGD1305447 (Sptlc2)
Uniprot/SPTREMBLA0A0G2K103, A0A0G2K103_RAT, F1LSV4, F1LSV4_RAT

Do not show this banner again