R. norvegicus Gene: T - ENSRNOG00000012229 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000012229
NameT
DescriptionT brachyury transcription factor [Source:RGD Symbol;Acc:1310141]
OrganismRattus norvegicus (rat)
Synonym(s)loc292301, t_predicted
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.77e3
  • 8.77e3
  • 1.46e4
68.05
  • 68.05
  • 46.93
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
  • 2.20e4
62.21
  • 62.21
  • 20.04
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.69
  • 58.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
  • 1.78e4
58.33
  • 58.33
  • 35.26
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.75
  • 38.75
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.70e4
  • 1.70e4
38.05
  • 38.05
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.55
  • 35.55
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.02e4
  • 2.02e4
26.48
  • 26.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000012229.

Cross-references

EnsemblENSRNOG00000012229 (T)
RGD1310141 (T)
EMBLAC127842, CH474059
Uniprot/SPTREMBLD4A4W8, D4A4W8_RAT

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