R. norvegicus Gene: Mesdc1 - ENSRNOG00000012349 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000012349
NameMesdc1
Descriptionmesoderm development candidate 1 [Source:RGD Symbol;Acc:1311666]
OrganismRattus norvegicus (rat)
Synonym(s)loc308795, mgc109280
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.10e3
  • 3.10e3
88.71
  • 88.71
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.15e3
  • 3.15e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.77e3
  • 3.77e3
  • 6.90e3
86.28
  • 86.28
  • 74.86
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.86e3
  • 3.86e3
85.93
  • 85.93
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.98e3
  • 3.98e3
85.49
  • 85.49
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
3.99e3
  • 3.99e3
85.46
  • 85.46
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.04e3
  • 5.04e3
81.64
  • 81.64
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.48e3
  • 5.48e3
80.04
  • 80.04
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.70e3
  • 5.70e3
79.24
  • 79.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.84e3
  • 5.84e3
78.72
  • 78.72
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.16e3
  • 6.16e3
77.58
  • 77.58
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.19e3
  • 6.19e3
77.44
  • 77.44
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.35e3
  • 6.35e3
  • 6.93e3
76.87
  • 76.87
  • 74.74
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
7.16e3
  • 7.16e3
73.93
  • 73.93
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.78e3
  • 7.78e3
71.65
  • 71.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.83e3
  • 7.83e3
  • 1.13e4
71.48
  • 71.48
  • 58.90
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
8.26e3
  • 8.26e3
  • 8.63e3
  • 9.54e3
69.93
  • 69.93
  • 68.55
  • 65.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.38e3
  • 8.38e3
69.48
  • 69.48
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
8.45e3
  • 8.45e3
69.24
  • 69.24
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.60e3
  • 9.60e3
65.05
  • 65.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000012349.

Cross-references

EnsemblENSRNOG00000012349 (Mesdc1)
RGD1311666 (Mesdc1)
EMBLAABR07004495, BC091313, CH473980
Uniprot/SPTREMBLQ5BJV3, Q5BJV3_RAT

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