R. norvegicus Gene: Slc39a8 - ENSRNOG00000012508 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000012508
NameSlc39a8
Descriptionsolute carrier family 39 (zinc transporter), member 8 [Source:RGD Symbol;Acc:1308236]
OrganismRattus norvegicus (rat)
Synonym(s)loc295455, mgc108852, zip-8, zip8
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
2.66e3
  • 2.66e3
  • 2.92e3
  • 3.45e3
90.33
  • 90.33
  • 89.35
  • 87.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.69e3
  • 3.69e3
86.57
  • 86.57
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.88e3
  • 3.88e3
85.87
  • 85.87
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.13e3
  • 4.13e3
84.95
  • 84.95
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.73e3
  • 4.73e3
82.77
  • 82.77
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
4.76e3
  • 4.76e3
82.68
  • 82.68
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.75e3
  • 5.75e3
79.05
  • 79.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.99e3
  • 5.99e3
  • 1.02e4
78.17
  • 78.17
  • 62.92
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.51e3
  • 6.51e3
76.27
  • 76.27
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
6.58e3
  • 6.58e3
76.04
  • 76.04
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
8.42e3
  • 8.42e3
69.34
  • 69.34
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.53e3
  • 9.53e3
65.27
  • 65.27
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.84
  • 57.84
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.25
  • 56.25
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.26
  • 54.26
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
  • 1.49e4
50.28
  • 50.28
  • 45.60
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.06
  • 50.06
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.77
  • 38.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000012508.

Cross-references

EnsemblENSRNOG00000012508 (Slc39a8)
RGD1308236 (Slc39a8)
EMBLBC089844
Uniprot/SWISSPROTQ5FVQ0, S39A8_RAT

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