Gene: Slc39a8 - ENSRNOG00000012508 - Rattus norvegicus (rat)

General information

Ensembl ID	ENSRNOG00000012508
Name	Slc39a8
Description	solute carrier family 39 (zinc transporter), member 8 [Source:RGD Symbol;Acc:1308236]
Organism	Rattus norvegicus (rat)
Synonym(s)	loc295455, mgc108852, zip-8, zip8
Orthologs(s)	17 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002107	liver	[+] 3 stages RnorDv:00000194-6-month-old stage (rat) UBERON:0000113post-juvenile adult stage UBERON:0034920infant stage	2.66e3 2.66e3 2.92e3 3.45e3	90.33 90.33 89.35 87.44	AEIR AEIR AEIR AEIR
UBERON:0001264	pancreas	[+] 1 stage UBERON:0000113post-juvenile adult stage	3.69e3 3.69e3	86.57 86.57	AEIR AEIR
UBERON:0000082	adult mammalian kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	3.88e3 3.88e3	85.87 85.87	AEIR AEIR
UBERON:0002115	jejunum	[+] 1 stage UBERON:0000113post-juvenile adult stage	4.13e3 4.13e3	84.95 84.95	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000113post-juvenile adult stage	4.73e3 4.73e3	82.77 82.77	AEIR AEIR
UBERON:0001155	colon	[+] 1 stage UBERON:0000113post-juvenile adult stage	4.76e3 4.76e3	82.68 82.68	AEIR AEIR
UBERON:0002048	lung	[+] 1 stage UBERON:0000113post-juvenile adult stage	5.75e3 5.75e3	79.05 79.05	AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	5.99e3 5.99e3 1.02e4	78.17 78.17 62.92	AEIR AEIR AEIR
UBERON:0002114	duodenum	[+] 1 stage UBERON:0000113post-juvenile adult stage	6.51e3 6.51e3	76.27 76.27	AEIR AEIR
UBERON:0002116	ileum	[+] 1 stage UBERON:0000113post-juvenile adult stage	6.58e3 6.58e3	76.04 76.04	AEIR AEIR
UBERON:0002370	thymus	[+] 1 stage UBERON:0000113post-juvenile adult stage	8.42e3 8.42e3	69.34 69.34	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000113post-juvenile adult stage	9.53e3 9.53e3	65.27 65.27	AEIR AEIR
UBERON:0002037	cerebellum	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.10e4 1.10e4	59.99 59.99	AEIR AEIR
UBERON:0000945	stomach	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.16e4 1.16e4	57.84 57.84	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.16e4 1.16e4	57.60 57.60	AEIR AEIR
UBERON:0001043	esophagus	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.20e4 1.20e4	56.25 56.25	AEIR AEIR
UBERON:0001377	quadriceps femoris	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.26e4 1.26e4	54.26 54.26	AEIR AEIR
UBERON:0001870	frontal cortex	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	1.36e4 1.36e4 1.49e4	50.28 50.28 45.60	AEIR AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.37e4 1.37e4	50.06 50.06	AEIR AEIR
UBERON:0001954	Ammon's horn	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.68e4 1.68e4	38.77 38.77	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: GEO
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Murinae	1 species Mus musculus (mouse)	1 gene ENSMUSG00000053897 Slc39a8	Compare expression	[+]
Rodentia	2 species Mus musculus (mouse) Cavia porcellus (guinea pig)	2 genes ENSMUSG00000053897 Slc39a8 ENSCPOG00000003883 SLC39A8	Compare expression	[+]
Glires	3 species Mus musculus (mouse) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig)	3 genes ENSMUSG00000053897 Slc39a8 ENSOCUG00000004184 SLC39A8 ENSCPOG00000003883 SLC39A8	Compare expression	[+]
Euarchontoglires	7 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig)	7 genes ENSG00000138821 SLC39A8 ENSMUSG00000053897 Slc39a8 ENSPTRG00000016318 SLC39A8 ENSGGOG00000002889 SLC39A8 ENSMMUG00000016880 SLC39A8 ENSOCUG00000004184 SLC39A8 ENSCPOG00000003883 SLC39A8	Compare expression	[+]
Boreoeutheria	12 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig)	12 genes ENSG00000138821 SLC39A8 ENSMUSG00000053897 Slc39a8 ENSPTRG00000016318 SLC39A8 ENSGGOG00000002889 SLC39A8 ENSMMUG00000016880 SLC39A8 ENSBTAG00000005668 SLC39A8 ENSSSCG00000009169 SLC39A8 ENSECAG00000025010 SLC39A8 ENSOCUG00000004184 SLC39A8 ENSCAFG00000010689 SLC39A8 ENSFCAG00000011828 SLC39A8 ENSCPOG00000003883 SLC39A8	Compare expression	[+]
Theria	13 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum)	13 genes ENSG00000138821 SLC39A8 ENSMUSG00000053897 Slc39a8 ENSPTRG00000016318 SLC39A8 ENSGGOG00000002889 SLC39A8 ENSMMUG00000016880 SLC39A8 ENSBTAG00000005668 SLC39A8 ENSSSCG00000009169 SLC39A8 ENSECAG00000025010 SLC39A8 ENSOCUG00000004184 SLC39A8 ENSCAFG00000010689 SLC39A8 ENSFCAG00000011828 SLC39A8 ENSCPOG00000003883 SLC39A8 ENSMODG00000020674 SLC39A8	Compare expression	[+]
Amniota	15 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole)	15 genes ENSG00000138821 SLC39A8 ENSMUSG00000053897 Slc39a8 ENSPTRG00000016318 SLC39A8 ENSGGOG00000002889 SLC39A8 ENSMMUG00000016880 SLC39A8 ENSBTAG00000005668 SLC39A8 ENSSSCG00000009169 SLC39A8 ENSECAG00000025010 SLC39A8 ENSOCUG00000004184 SLC39A8 ENSCAFG00000010689 SLC39A8 ENSFCAG00000011828 SLC39A8 ENSCPOG00000003883 SLC39A8 ENSMODG00000020674 SLC39A8 ENSGALG00000012298 SLC39A8 ENSACAG00000012798 SLC39A8	Compare expression	[+]
Tetrapoda	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000138821 SLC39A8 ENSMUSG00000053897 Slc39a8 ENSPTRG00000016318 SLC39A8 ENSGGOG00000002889 SLC39A8 ENSMMUG00000016880 SLC39A8 ENSBTAG00000005668 SLC39A8 ENSSSCG00000009169 SLC39A8 ENSECAG00000025010 SLC39A8 ENSOCUG00000004184 SLC39A8 ENSCAFG00000010689 SLC39A8 ENSFCAG00000011828 SLC39A8 ENSCPOG00000003883 SLC39A8 ENSMODG00000020674 SLC39A8 ENSGALG00000012298 SLC39A8 ENSACAG00000012798 SLC39A8 ENSXETG00000021329 slc39a8	Compare expression	[+]
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000138821 SLC39A8 ENSMUSG00000053897 Slc39a8 ENSDARG00000056757 SLC39A8 ENSPTRG00000016318 SLC39A8 ENSGGOG00000002889 SLC39A8 ENSMMUG00000016880 SLC39A8 ENSBTAG00000005668 SLC39A8 ENSSSCG00000009169 SLC39A8 ENSECAG00000025010 SLC39A8 ENSOCUG00000004184 SLC39A8 ENSCAFG00000010689 SLC39A8 ENSFCAG00000011828 SLC39A8 ENSCPOG00000003883 SLC39A8 ENSMODG00000020674 SLC39A8 ENSGALG00000012298 SLC39A8 ENSACAG00000012798 SLC39A8 ENSXETG00000021329 slc39a8	Compare expression	[+]

Orthology information comes from OMA : ENSRNOG00000012508.

Cross-references

Ensembl	ENSRNOG00000012508 (Slc39a8)
RGD	1308236 (Slc39a8)
EMBL	BC089844
Uniprot/SWISSPROT	Q5FVQ0, S39A8_RAT