R. norvegicus Gene: Vax2 - ENSRNOG00000013261 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000013261
NameVax2
Descriptionventral anterior homeobox 2 [Source:RGD Symbol;Acc:621133]
OrganismRattus norvegicus (rat)
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.27e4
  • 1.27e4
  • 1.54e4
  • 1.66e4
53.80
  • 53.80
  • 43.90
  • 39.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
  • 1.65e4
40.00
  • 40.00
  • 39.87
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.69e4
  • 1.69e4
38.40
  • 38.40
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.81e4
  • 1.81e4
33.93
  • 33.93
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
32.68
  • 32.68
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.87e4
  • 1.87e4
31.81
  • 31.81
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.92e4
  • 1.92e4
30.22
  • 30.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.99e4
  • 1.99e4
27.58
  • 27.58
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.09e4
  • 2.09e4
24.01
  • 24.01
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.14e4
  • 2.14e4
22.16
  • 22.16
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.16e4
  • 2.16e4
21.41
  • 21.41
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
2.18e4
  • 2.18e4
20.69
  • 20.69
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.19e4
  • 2.19e4
20.26
  • 20.26
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.19e4
  • 2.19e4
20.22
  • 20.22
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
2.20e4
  • 2.20e4
19.75
  • 19.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000013261.

Cross-references

EnsemblENSRNOG00000013261 (Vax2)
RGD621133 (Vax2)
EMBLAC111232, CH473957
Uniprot/SPTREMBLG3V7R0, G3V7R0_RAT

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