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R. norvegicus Gene: Cdh11 - ENSRNOG00000013481 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000013481
NameCdh11
Descriptioncadherin 11 [Source:RGD Symbol;Acc:619742]
OrganismRattus norvegicus (rat)
Orthologs(s)18 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
3.06e3
  • 3.06e3
  • 3.50e3
88.87
  • 88.87
  • 87.24
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.51e3
  • 5.51e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.63e3
  • 5.63e3
79.51
  • 79.51
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.07e3
  • 6.07e3
  • 6.09e3
77.90
  • 77.90
  • 77.82
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
6.23e3
  • 6.23e3
77.29
  • 77.29
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
7.11e3
  • 7.11e3
74.11
  • 74.11
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
7.53e3
  • 7.53e3
72.58
  • 72.58
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.89e3
  • 7.89e3
71.25
  • 71.25
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
7.99e3
  • 7.99e3
70.91
  • 70.91
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
8.18e3
  • 8.18e3
70.22
  • 70.22
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
8.45e3
  • 8.45e3
69.20
  • 69.20
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
8.74e3
  • 8.74e3
68.17
  • 68.17
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.82e3
  • 8.82e3
67.87
  • 67.87
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
8.82e3
  • 8.82e3
67.86
  • 67.86
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.07e3
  • 9.07e3
66.96
  • 66.96
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.09e3
  • 9.09e3
66.90
  • 66.90
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
56.94
  • 56.94
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.31e4
  • 1.31e4
  • 1.34e4
  • 1.48e4
52.37
  • 52.37
  • 51.29
  • 46.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
52.34
  • 52.34
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.02
  • 50.02
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
  • 1.86e4
44.07
  • 44.07
  • 32.10
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000013481.

Paralogs (same species)

Cross-references

EnsemblENSRNOG00000013481 (Cdh11)
RGD619742 (Cdh11)
EMBLAABR07042668, AABR07042669
Uniprot/SPTREMBLF1MAH6, F1MAH6_RAT

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