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R. norvegicus Gene: Cdh6 - ENSRNOG00000013535 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000013535
NameCdh6
Descriptioncadherin 6, type 2, K-cadherin [Source:RGD Symbol;Acc:2322]
OrganismRattus norvegicus (rat)
Synonym(s)kcad
Orthologs(s)17 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.72e3
  • 7.72e3
  • 9.16e3
71.87
  • 71.87
  • 66.63
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.39e3
  • 8.39e3
  • 2.21e4
69.43
  • 69.43
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.36e3
  • 9.36e3
65.90
  • 65.90
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.96
  • 58.96
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
52.04
  • 52.04
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
50.79
  • 50.79
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.94
  • 46.94
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.78
  • 46.78
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
46.33
  • 46.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
  • 1.88e4
45.72
  • 45.72
  • 31.56
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
45.09
  • 45.09
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
44.85
  • 44.85
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.63
  • 44.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
42.19
  • 42.19
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.60
  • 40.60
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.71
  • 38.71
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
37.44
  • 37.44
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.92e4
  • 1.92e4
30.22
  • 30.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
2.05e4
  • 2.05e4
25.25
  • 25.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000013535.

Paralogs (same species)

Cross-references

EnsemblENSRNOG00000013535 (Cdh6)
RGD2322 (Cdh6)
EMBLAABR07008517, AABR07008518
Uniprot/SPTREMBLF1LQP8, F1LQP8_RAT

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