R. norvegicus Gene: Ctdsp1 - ENSRNOG00000015295 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000015295
NameCtdsp1
DescriptionCTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Source:RGD Symbol;Acc:1305629]
OrganismRattus norvegicus (rat)
Synonym(s)loc363249
Orthologs(s)17 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
732
  • 732
97.34
  • 97.34
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
871
  • 871
96.83
  • 96.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
881
  • 881
  • 887
  • 1.16e3
96.80
  • 96.80
  • 96.77
  • 95.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
977
  • 977
96.44
  • 96.44
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.02e3
  • 1.02e3
96.29
  • 96.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.03e3
  • 1.03e3
96.24
  • 96.24
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.09e3
  • 1.09e3
96.04
  • 96.04
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.12e3
  • 1.12e3
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.22e3
  • 1.22e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.22e3
  • 1.22e3
95.56
  • 95.56
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.27e3
  • 1.27e3
95.39
  • 95.39
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.32e3
  • 1.32e3
95.20
  • 95.20
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.39e3
  • 1.39e3
94.93
  • 94.93
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.44e3
  • 1.44e3
94.77
  • 94.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.51e3
  • 1.51e3
  • 4.48e3
94.49
  • 94.49
  • 83.68
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.58e3
  • 1.58e3
94.25
  • 94.25
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.59e3
  • 1.59e3
94.20
  • 94.20
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.17e3
  • 4.17e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.25e3
  • 4.25e3
  • 7.45e3
84.52
  • 84.52
  • 72.87
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.84e3
  • 4.84e3
  • 5.58e3
82.37
  • 82.37
  • 79.69
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.01e4
  • 1.01e4
  • 1.04e4
63.16
  • 63.16
  • 62.12
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000015295.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000015295.

Cross-references

EnsemblENSRNOG00000015295 (Ctdsp1)
RGD1305629 (Ctdsp1)
EMBLAABR07068079, BC161976, CH474004
Uniprot/SPTREMBLB1WC24, B1WC24_RAT

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