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R. norvegicus Gene: Podxl2 - ENSRNOG00000016255 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000016255
NamePodxl2
Descriptionpodocalyxin-like 2 [Source:RGD Symbol;Acc:1305815]
OrganismRattus norvegicus (rat)
Synonym(s)loc297433, podxl2_predicted, rgd1305815
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.63e3
  • 1.63e3
94.05
  • 94.05
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.02e3
  • 2.02e3
  • 2.43e3
92.66
  • 92.66
  • 91.14
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.76e3
  • 3.76e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.67e3
  • 4.67e3
82.98
  • 82.98
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
7.33e3
  • 7.33e3
  • 7.64e3
73.31
  • 73.31
  • 72.18
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
7.33e3
  • 7.33e3
73.30
  • 73.30
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
7.57e3
  • 7.57e3
72.42
  • 72.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.69e3
  • 7.69e3
71.99
  • 71.99
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.39e3
  • 8.39e3
69.43
  • 69.43
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
8.58e3
  • 8.58e3
68.76
  • 68.76
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
9.97e3
  • 9.97e3
63.69
  • 63.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
  • 1.26e4
60.40
  • 60.40
  • 54.17
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
58.35
  • 58.35
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
57.98
  • 57.98
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.96
  • 54.96
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.32
  • 54.32
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.74
  • 53.74
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 1.39e4
52.84
  • 52.84
  • 49.40
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.73
  • 51.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
50.71
  • 50.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000016255.

Cross-references

EnsemblENSRNOG00000016255 (Podxl2)
RGD1305815 (Podxl2)
EMBLAC120997, BC161970, CH473957
Uniprot/SPTREMBLB1WC18, B1WC18_RAT

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