R. norvegicus Gene: Col4a1 - ENSRNOG00000016281 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000016281
NameCol4a1
Descriptioncollagen, type IV, alpha 1 [Source:RGD Symbol;Acc:1307148]
OrganismRattus norvegicus (rat)
Synonym(s)loc290905
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
750
  • 750
97.27
  • 97.27
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
753
  • 753
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
955
  • 955
96.53
  • 96.53
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.03e3
  • 1.03e3
96.24
  • 96.24
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.51e3
  • 1.51e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.52e3
  • 1.52e3
94.45
  • 94.45
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.57e3
  • 1.57e3
94.27
  • 94.27
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.60e3
  • 1.60e3
94.17
  • 94.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.65e3
  • 1.65e3
93.99
  • 93.99
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.74e3
  • 1.74e3
93.67
  • 93.67
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.87e3
  • 1.87e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.20e3
  • 2.20e3
91.99
  • 91.99
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.90e3
  • 2.90e3
89.44
  • 89.44
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.97e3
  • 3.97e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
6.05e3
  • 6.05e3
  • 6.91e3
  • 7.17e3
77.95
  • 77.95
  • 74.82
  • 73.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.08e3
  • 6.08e3
77.84
  • 77.84
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.80e3
  • 6.80e3
  • 8.26e3
75.23
  • 75.23
  • 69.92
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.50e3
  • 7.50e3
  • 8.62e3
72.70
  • 72.70
  • 68.58
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.67e3
  • 8.67e3
  • 9.60e3
68.42
  • 68.42
  • 65.02
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
9.41e3
  • 9.41e3
65.72
  • 65.72
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.24e4
  • 1.24e4
  • 1.26e4
54.79
  • 54.79
  • 54.10
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000016281.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000016281.

Cross-references

EnsemblENSRNOG00000016281 (Col4a1)
RGD1307148 (Col4a1)
EMBLAABR07026563
Uniprot/SPTREMBLF1MA59, F1MA59_RAT

Do not show this banner again