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R. norvegicus Gene: Slc18b1 - ENSRNOG00000016371 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000016371
NameSlc18b1
Descriptionsolute carrier family 18, subfamily B, member 1 [Source:RGD Symbol;Acc:1306962]
OrganismRattus norvegicus (rat)
Synonym(s)loc309570, rgd1306962
Orthologs(s)18 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
2.70e3
  • 2.70e3
90.16
  • 90.16
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.71e3
  • 3.71e3
86.49
  • 86.49
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
4.81e3
  • 4.81e3
82.49
  • 82.49
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
5.96e3
  • 5.96e3
78.30
  • 78.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.63e3
  • 6.63e3
  • 9.07e3
75.86
  • 75.86
  • 66.97
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
6.63e3
  • 6.63e3
  • 7.06e3
  • 7.74e3
75.83
  • 75.83
  • 74.30
  • 71.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
6.66e3
  • 6.66e3
75.75
  • 75.75
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.10e3
  • 7.10e3
74.12
  • 74.12
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
7.13e3
  • 7.13e3
74.02
  • 74.02
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
7.20e3
  • 7.20e3
73.76
  • 73.76
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.44e3
  • 8.44e3
69.26
  • 69.26
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.72e3
  • 8.72e3
  • 8.99e3
68.24
  • 68.24
  • 67.27
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
8.74e3
  • 8.74e3
68.15
  • 68.15
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.80e3
  • 8.80e3
67.94
  • 67.94
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
9.29e3
  • 9.29e3
66.16
  • 66.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.34e3
  • 9.34e3
  • 1.24e4
65.98
  • 65.98
  • 54.66
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.80e3
  • 9.80e3
64.32
  • 64.32
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
9.89e3
  • 9.89e3
63.97
  • 63.97
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
61.02
  • 61.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.52
  • 52.52
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
42.44
  • 42.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000016371.

Paralogs (same species)

Cross-references

EnsemblENSRNOG00000016371 (Slc18b1)
RGD1306962 (Slc18b1)
EMBLAABR07071854, AC130057
Uniprot/SPTREMBLD4A9K4, D4A9K4_RAT

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