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R. norvegicus Gene: Nop16 - ENSRNOG00000017284 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000017284
NameNop16
DescriptionNOP16 nucleolar protein [Source:RGD Symbol;Acc:1305727]
OrganismRattus norvegicus (rat)
Synonym(s)loc306768, rgd1305727
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.66e3
  • 1.66e3
93.95
  • 93.95
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.78e3
  • 1.78e3
93.52
  • 93.52
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.84e3
  • 1.84e3
93.32
  • 93.32
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.21e3
  • 2.21e3
91.95
  • 91.95
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.46e3
  • 2.46e3
91.03
  • 91.03
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.47e3
  • 2.47e3
91.00
  • 91.00
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.51e3
  • 2.51e3
90.86
  • 90.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
2.55e3
  • 2.55e3
90.72
  • 90.72
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.66e3
  • 2.66e3
90.30
  • 90.30
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.69e3
  • 2.69e3
  • 4.00e3
90.21
  • 90.21
  • 85.44
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.72e3
  • 2.72e3
90.11
  • 90.11
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.77e3
  • 2.77e3
89.90
  • 89.90
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
2.97e3
  • 2.97e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.28e3
  • 3.28e3
88.04
  • 88.04
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
3.33e3
  • 3.33e3
  • 3.49e3
  • 3.73e3
87.89
  • 87.89
  • 87.28
  • 86.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.59e3
  • 3.59e3
86.94
  • 86.94
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.70e3
  • 3.70e3
86.53
  • 86.53
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.77e3
  • 3.77e3
86.25
  • 86.25
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.12e3
  • 4.12e3
84.99
  • 84.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.42e3
  • 4.42e3
  • 5.54e3
83.91
  • 83.91
  • 79.83
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
6.73e3
  • 6.73e3
  • 6.73e3
75.49
  • 75.49
  • 75.47
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000017284.

Cross-references

EnsemblENSRNOG00000017284 (Nop16)
RGD1305727 (Nop16)
EMBLAABR07027009, AB256043, AM258958, BC158562, CH474032
Uniprot/SPTREMBLB0BMU2, B0BMU2_RAT
Uniprot/SWISSPROTNOP16_RAT, Q1RP77

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