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R. norvegicus Gene: Rab4a - ENSRNOG00000017467 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000017467
NameRab4a
DescriptionRAB4A, member RAS oncogene family [Source:RGD Symbol;Acc:3529]
OrganismRattus norvegicus (rat)
Synonym(s)q6p6u4, rab4
Orthologs(s)22 orthologs
Paralog(s)65 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.37e3
  • 1.37e3
95.01
  • 95.01
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.15e3
  • 2.15e3
  • 2.40e3
92.19
  • 92.19
  • 91.25
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.98e3
  • 2.98e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.11e3
  • 3.11e3
88.66
  • 88.66
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.29e3
  • 3.29e3
88.01
  • 88.01
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.46e3
  • 3.46e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
3.46e3
  • 3.46e3
87.39
  • 87.39
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.71e3
  • 3.71e3
86.49
  • 86.49
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.75e3
  • 3.75e3
86.34
  • 86.34
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.89e3
  • 3.89e3
85.83
  • 85.83
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.97e3
  • 3.97e3
85.52
  • 85.52
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.99e3
  • 3.99e3
85.46
  • 85.46
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.44e3
  • 4.44e3
83.83
  • 83.83
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
4.89e3
  • 4.89e3
  • 5.53e3
  • 5.99e3
82.20
  • 82.20
  • 79.86
  • 78.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.94e3
  • 4.94e3
82.01
  • 82.01
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.22e3
  • 5.22e3
80.99
  • 80.99
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.27e3
  • 5.27e3
80.82
  • 80.82
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.30e3
  • 6.30e3
77.05
  • 77.05
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
6.74e3
  • 6.74e3
  • 6.93e3
75.46
  • 75.46
  • 74.77
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
8.50e3
  • 8.50e3
69.05
  • 69.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.65e3
  • 8.65e3
  • 1.06e4
68.50
  • 68.50
  • 61.30
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000017467.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta15 genesCompare expression
Eukaryota65 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000017467.

Cross-references

EnsemblENSRNOG00000017467 (Rab4a)
RGD3529 (Rab4a)
EMBLAABR07044082, AABR07072663, BC062016, X06890
Uniprot/SPTREMBLD4ADS8, D4ADS8_RAT
Uniprot/SWISSPROTP05714, RAB4A_RAT

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