R. norvegicus Gene: Ppargc1b - ENSRNOG00000017503 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000017503
NamePpargc1b
Descriptionperoxisome proliferator-activated receptor gamma, coactivator 1 beta [Source:RGD Symbol;Acc:727948]
OrganismRattus norvegicus (rat)
Synonym(s)perc, pgc1, pgc1b, pgc1beta, ppargc1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.67e3
  • 3.67e3
  • 4.72e3
86.62
  • 86.62
  • 82.80
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.68e3
  • 6.68e3
75.67
  • 75.67
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.14e3
  • 7.14e3
74.01
  • 74.01
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
8.62e3
  • 8.62e3
68.61
  • 68.61
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.85e3
  • 8.85e3
67.75
  • 67.75
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.80e3
  • 9.80e3
64.31
  • 64.31
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.82
  • 60.82
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
  • 1.20e4
60.65
  • 60.65
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.73
  • 58.73
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.15e4
  • 1.15e4
  • 1.18e4
  • 1.24e4
57.95
  • 57.95
  • 56.99
  • 54.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.58
  • 57.58
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
56.70
  • 56.70
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
  • 1.31e4
56.68
  • 56.68
  • 52.11
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.63
  • 52.63
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.21
  • 50.21
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
49.93
  • 49.93
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.94
  • 46.94
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.64
  • 43.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000017503.

Cross-references

EnsemblENSRNOG00000017503 (Ppargc1b)
RGD727948 (Ppargc1b)
EMBLAABR03000001, AABR03110123, AABR07032247, AABR07032248, AABR07072607, AC122967, AY188951
Uniprot/SPTREMBLR9PY06, R9PY06_RAT
Uniprot/SWISSPROTPRGC2_RAT, Q811R2

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