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R. norvegicus Gene: Sytl3 - ENSRNOG00000018321 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000018321
NameSytl3
Descriptionsynaptotagmin-like 3 [Source:RGD Symbol;Acc:1561992]
OrganismRattus norvegicus (rat)
Synonym(s)loc499017, rgd1561992
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.12e3
  • 9.12e3
66.77
  • 66.77
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.58e3
  • 9.58e3
  • 1.69e4
65.09
  • 65.09
  • 38.26
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
  • 1.98e4
59.74
  • 59.74
  • 27.82
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
58.64
  • 58.64
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.19
  • 55.19
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.19
  • 54.19
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.17
  • 54.17
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.12
  • 54.12
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.45
  • 51.45
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.69
  • 47.69
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.66
  • 46.66
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.65
  • 46.65
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
45.97
  • 45.97
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
43.80
  • 43.80
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.29
  • 43.29
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
39.91
  • 39.91
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.69e4
  • 1.69e4
  • 1.86e4
38.32
  • 38.32
  • 32.12
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.73e4
  • 1.73e4
37.01
  • 37.01
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
  • 2.04e4
36.44
  • 36.44
  • 25.68
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000018321.

Cross-references

EnsemblENSRNOG00000018321 (Sytl3)
RGD1561992 (Sytl3)
EMBLAABR07001488
Uniprot/SPTREMBLE9PU77, E9PU77_RAT

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