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R. norvegicus Gene: Atg4b - ENSRNOG00000018403 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000018403
NameAtg4b
Descriptionautophagy related 4B, cysteine peptidase [Source:RGD Symbol;Acc:1309664]
OrganismRattus norvegicus (rat)
Synonym(s)apg4b, loc316640, mgc112887
Orthologs(s)24 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.27e3
  • 3.27e3
88.08
  • 88.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.68e3
  • 3.68e3
  • 2.21e4
86.60
  • 86.60
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.68e3
  • 3.68e3
86.58
  • 86.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
3.74e3
  • 3.74e3
  • 4.85e3
  • 5.10e3
86.40
  • 86.40
  • 82.32
  • 81.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.83e3
  • 3.83e3
86.06
  • 86.06
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.14e3
  • 4.14e3
  • 4.21e3
84.91
  • 84.91
  • 84.66
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.27e3
  • 4.27e3
84.45
  • 84.45
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.51e3
  • 4.51e3
83.56
  • 83.56
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
4.63e3
  • 4.63e3
83.14
  • 83.14
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.69e3
  • 4.69e3
82.91
  • 82.91
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.81e3
  • 4.81e3
82.47
  • 82.47
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.86e3
  • 4.86e3
82.29
  • 82.29
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.96e3
  • 4.96e3
81.92
  • 81.92
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.97e3
  • 4.97e3
81.92
  • 81.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
4.97e3
  • 4.97e3
81.89
  • 81.89
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.19e3
  • 5.19e3
81.10
  • 81.10
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.20e3
  • 5.20e3
81.07
  • 81.07
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.47e3
  • 5.47e3
80.07
  • 80.07
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.59e3
  • 5.59e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
6.04e3
  • 6.04e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.30e3
  • 6.30e3
  • 2.26e4
77.05
  • 77.05
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.13e4
  • 1.13e4
  • 1.13e4
59.00
  • 59.00
  • 58.99
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000018403.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000018403.

Cross-references

EnsemblENSRNOG00000018403 (Atg4b)
RGD1309664 (Atg4b)
EMBLAC109427
Uniprot/SPTREMBLA0A0G2QC33, A0A0G2QC33_RAT

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