R. norvegicus Gene: Ptma - ENSRNOG00000018584 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000018584
NamePtma
Descriptionprothymosin alpha [Source:RGD Symbol;Acc:61829]
OrganismRattus norvegicus (rat)
Synonym(s)q569c8
Orthologs(s)4 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
40.7
  • 40.7
99.86
  • 99.86
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
79.4
  • 79.4
99.71
  • 99.71
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
87.0
  • 87.0
99.69
  • 99.69
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
116
  • 116
99.58
  • 99.58
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
117
  • 117
99.58
  • 99.58
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
134
  • 134
99.51
  • 99.51
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
143
  • 143
99.48
  • 99.48
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
151
  • 151
99.45
  • 99.45
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
169
  • 169
99.39
  • 99.39
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
180
  • 180
99.35
  • 99.35
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
193
  • 193
99.30
  • 99.30
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
206
  • 206
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
217
  • 217
  • 561
99.21
  • 99.21
  • 97.96
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
222
  • 222
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
224
  • 224
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
387
  • 387
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
743
  • 743
97.30
  • 97.30
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.12e3
  • 1.12e3
  • 1.18e3
  • 1.23e3
95.94
  • 95.94
  • 95.72
  • 95.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.18e3
  • 1.18e3
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.57e3
  • 2.57e3
  • 5.99e3
90.65
  • 90.65
  • 78.18
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Muroidea2 genesCompare expression
Rodentia3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000018584.

Cross-references

EnsemblENSRNOG00000018584 (Ptma)
RGD2323611 (LOC100359583), 61829 (Ptma)
EMBLBC061972, BC092569, M20035, M33024, M86564, X55326
Uniprot/SWISSPROTP06302, PTMA_RAT

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