Gene: Ptma - ENSRNOG00000018584 - Rattus norvegicus (rat)

General information

Ensembl ID	ENSRNOG00000018584
Name	Ptma
Description	prothymosin alpha [Source:RGD Symbol;Acc:61829]
Organism	Rattus norvegicus (rat)
Synonym(s)	q569c8
Orthologs(s)	4 orthologs
Paralog(s)	3 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002370	thymus	[+] 1 stage UBERON:0000113post-juvenile adult stage	40.7 40.7	99.86 99.86	AEIR AEIR
UBERON:0002048	lung	[+] 1 stage UBERON:0000113post-juvenile adult stage	79.4 79.4	99.71 99.71	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000113post-juvenile adult stage	87.0 87.0	99.69 99.69	AEIR AEIR
UBERON:0001155	colon	[+] 1 stage UBERON:0000113post-juvenile adult stage	116 116	99.58 99.58	AEIR AEIR
UBERON:0002116	ileum	[+] 1 stage UBERON:0000113post-juvenile adult stage	117 117	99.58 99.58	AEIR AEIR
UBERON:0002115	jejunum	[+] 1 stage UBERON:0000113post-juvenile adult stage	134 134	99.51 99.51	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000113post-juvenile adult stage	143 143	99.48 99.48	AEIR AEIR
UBERON:0000945	stomach	[+] 1 stage UBERON:0000113post-juvenile adult stage	151 151	99.45 99.45	AEIR AEIR
UBERON:0001043	esophagus	[+] 1 stage UBERON:0000113post-juvenile adult stage	169 169	99.39 99.39	AEIR AEIR
UBERON:0002114	duodenum	[+] 1 stage UBERON:0000113post-juvenile adult stage	180 180	99.35 99.35	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	193 193	99.30 99.30	AEIR AEIR
UBERON:0000082	adult mammalian kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	206 206	99.25 99.25	AEIR AEIR
UBERON:0001870	frontal cortex	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	217 217 561	99.21 99.21 97.96	AEIR AEIR AEIR
UBERON:0002037	cerebellum	[+] 1 stage UBERON:0000113post-juvenile adult stage	222 222	99.19 99.19	AEIR AEIR
UBERON:0001264	pancreas	[+] 1 stage UBERON:0000113post-juvenile adult stage	224 224	99.19 99.19	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000113post-juvenile adult stage	387 387	98.59 98.59	AEIR AEIR
UBERON:0001377	quadriceps femoris	[+] 1 stage UBERON:0000113post-juvenile adult stage	743 743	97.30 97.30	AEIR AEIR
UBERON:0002107	liver	[+] 3 stages RnorDv:00000194-6-month-old stage (rat) UBERON:0000113post-juvenile adult stage UBERON:0034920infant stage	1.12e3 1.12e3 1.18e3 1.23e3	95.94 95.94 95.72 95.53	AEIR AEIR AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.18e3 1.18e3	95.70 95.70	AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	2.57e3 2.57e3 5.99e3	90.65 90.65 78.18	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Murinae	1 species Mus musculus (mouse)	1 gene ENSMUSG00000026238 Ptma	Compare expression	[+]
Rodentia	2 species Mus musculus (mouse) Cavia porcellus (guinea pig)	2 genes ENSMUSG00000026238 Ptma ENSCPOG00000022634	Compare expression	[+]
Tetrapoda	3 species Mus musculus (mouse) Cavia porcellus (guinea pig) Xenopus tropicalis (western clawed frog)	3 genes ENSMUSG00000026238 Ptma ENSCPOG00000022634 ENSXETG00000022757 ptma	Compare expression	[+]
Euteleostomi	4 species Mus musculus (mouse) Danio rerio (zebrafish) Cavia porcellus (guinea pig) Xenopus tropicalis (western clawed frog)	4 genes ENSMUSG00000026238 Ptma ENSDARG00000021113 ptmaa ENSCPOG00000022634 ENSXETG00000022757 ptma	Compare expression	[+]

Orthology information comes from OMA : ENSRNOG00000018584.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Muroidea	2 genes ENSRNOG00000004661 LOC689166 ENSRNOG00000039439 AC121204.1	Compare expression	[+]
Rodentia	3 genes ENSRNOG00000004661 LOC689166 ENSRNOG00000039332 AABR07021066.1 ENSRNOG00000039439 AC121204.1	Compare expression	[+]

Paralogy information comes from OMA : ENSRNOG00000018584.

Cross-references

Ensembl	ENSRNOG00000018584 (Ptma)
RGD	2323611 (LOC100359583), 61829 (Ptma)
EMBL	BC061972, BC092569, M20035, M33024, M86564, X55326
Uniprot/SWISSPROT	P06302, PTMA_RAT