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R. norvegicus Gene: Camk2a - ENSRNOG00000018712 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000018712
NameCamk2a
Descriptioncalcium/calmodulin-dependent protein kinase II alpha [Source:RGD Symbol;Acc:2261]
OrganismRattus norvegicus (rat)
Synonym(s)pk2cdd, pkccd
Orthologs(s)23 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
30.8
  • 30.8
  • 139
99.89
  • 99.89
  • 99.50
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
89.9
  • 89.9
  • 6.72e3
99.68
  • 99.68
  • 75.53
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.24e3
  • 1.24e3
95.48
  • 95.48
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.52e3
  • 1.52e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.50e3
  • 5.50e3
79.98
  • 79.98
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.18e3
  • 6.18e3
77.48
  • 77.48
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.15e3
  • 7.15e3
73.97
  • 73.97
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.20e4
  • 1.20e4
  • 1.20e4
56.36
  • 56.36
  • 56.32
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
51.36
  • 51.36
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.64
  • 50.64
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.36
  • 50.36
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.26
  • 50.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
  • 1.76e4
49.10
  • 49.10
  • 35.99
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.57
  • 48.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 2.26e4
44.70
  • 44.70
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.25
  • 44.25
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
43.84
  • 43.84
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.74
  • 40.74
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
39.17
  • 39.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.40
  • 35.40
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.80e4
  • 1.80e4
34.34
  • 34.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000018712.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000018712.

Cross-references

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