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R. norvegicus Gene: Trim33 - ENSRNOG00000018946 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000018946
NameTrim33
Descriptiontripartite motif-containing 33 [Source:RGD Symbol;Acc:1307339]
OrganismRattus norvegicus (rat)
Synonym(s)loc365894
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.05e3
  • 3.05e3
  • 4.37e3
88.91
  • 88.91
  • 84.07
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.90e3
  • 6.90e3
74.87
  • 74.87
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
6.91e3
  • 6.91e3
74.81
  • 74.81
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.34e3
  • 7.34e3
  • 8.09e3
73.27
  • 73.27
  • 70.52
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.67e3
  • 7.67e3
  • 9.34e3
72.06
  • 72.06
  • 65.97
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
7.88e3
  • 7.88e3
71.30
  • 71.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
7.98e3
  • 7.98e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
8.09e3
  • 8.09e3
70.55
  • 70.55
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
8.31e3
  • 8.31e3
69.72
  • 69.72
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.31e3
  • 8.31e3
69.71
  • 69.71
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
8.53e3
  • 8.53e3
68.94
  • 68.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
8.67e3
  • 8.67e3
  • 8.67e3
  • 1.08e4
68.43
  • 68.43
  • 68.40
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
8.80e3
  • 8.80e3
67.96
  • 67.96
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
8.81e3
  • 8.81e3
67.90
  • 67.90
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.17e3
  • 9.17e3
66.59
  • 66.59
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.26e3
  • 9.26e3
66.25
  • 66.25
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.52e3
  • 9.52e3
65.32
  • 65.32
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.29
  • 63.29
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
61.04
  • 61.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000018946.

Cross-references

EnsemblENSRNOG00000018946 (Trim33)
RGD1307339 (Trim33)
EMBLAABR07012752, AABR07012753
Uniprot/SPTREMBLD3ZUK4, D3ZUK4_RAT, D3ZUM5, D3ZUM5_RAT

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