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R. norvegicus Gene: Psd - ENSRNOG00000019435 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000019435
NamePsd
Descriptionpleckstrin and Sec7 domain containing [Source:RGD Symbol;Acc:620297]
OrganismRattus norvegicus (rat)
Synonym(s)efa6
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
774
  • 774
  • 1.64e3
97.18
  • 97.18
  • 94.01
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.27e3
  • 1.27e3
  • 2.86e3
95.37
  • 95.37
  • 89.60
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
5.82e3
  • 5.82e3
78.82
  • 78.82
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
7.38e3
  • 7.38e3
  • 7.57e3
73.10
  • 73.10
  • 72.43
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.31e3
  • 9.31e3
66.10
  • 66.10
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
  • 1.14e4
59.43
  • 59.43
  • 58.37
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.25
  • 59.25
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.95
  • 58.95
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.17e4
  • 1.17e4
57.35
  • 57.35
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.38
  • 54.38
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
53.18
  • 53.18
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.22
  • 49.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
  • 1.81e4
44.68
  • 44.68
  • 33.93
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.33
  • 44.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.39
  • 43.39
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.71
  • 41.71
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.64
  • 41.64
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.55
  • 40.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.70e4
  • 1.70e4
38.04
  • 38.04
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.71e4
  • 1.71e4
37.87
  • 37.87
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.83e4
  • 1.83e4
33.29
  • 33.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000019435.

Cross-references

EnsemblENSRNOG00000019435 (Psd)
RGD620297 (Psd)
EMBLAC096600, CH473986
Uniprot/SPTREMBLG3V8J5, G3V8J5_RAT

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