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R. norvegicus Gene: Josd2 - ENSRNOG00000019442 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000019442
NameJosd2
DescriptionJosephin domain containing 2 [Source:RGD Symbol;Acc:1307305]
OrganismRattus norvegicus (rat)
Synonym(s)loc292876, rgd1307305
Orthologs(s)20 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.31e3
  • 1.31e3
  • 2.95e3
95.23
  • 95.23
  • 89.27
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.05e3
  • 2.05e3
92.53
  • 92.53
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.30e3
  • 2.30e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.32e3
  • 2.32e3
91.54
  • 91.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.45e3
  • 2.45e3
  • 3.06e3
91.10
  • 91.10
  • 88.87
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
2.56e3
  • 2.56e3
  • 4.32e3
  • 4.41e3
90.68
  • 90.68
  • 84.26
  • 83.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.77e3
  • 2.77e3
89.90
  • 89.90
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.83e3
  • 2.83e3
89.69
  • 89.69
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.83e3
  • 2.83e3
89.69
  • 89.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.25e3
  • 3.25e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.41e3
  • 3.41e3
  • 4.32e3
87.60
  • 87.60
  • 84.26
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.74e3
  • 3.74e3
86.38
  • 86.38
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.18e3
  • 4.18e3
84.78
  • 84.78
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.33e3
  • 4.33e3
84.22
  • 84.22
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.36e3
  • 4.36e3
84.13
  • 84.13
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
4.88e3
  • 4.88e3
82.22
  • 82.22
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.90e3
  • 4.90e3
82.14
  • 82.14
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.15e3
  • 5.15e3
81.25
  • 81.25
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
5.72e3
  • 5.72e3
79.17
  • 79.17
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
5.99e3
  • 5.99e3
  • 6.20e3
78.18
  • 78.18
  • 77.42
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.62e3
  • 6.62e3
75.89
  • 75.89
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
8.67e3
  • 8.67e3
68.43
  • 68.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Amniota11 species11 genesCompare expression
Euteleostomi12 species12 genesCompare expression
Bilateria19 species20 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000019442.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000019442.

Cross-references

EnsemblENSRNOG00000019442 (Josd2)
RGD1307305 (Josd2)
EMBLAABR07003256, CH473979
Uniprot/SPTREMBLD4AD44, D4AD44_RAT

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