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R. norvegicus Gene: Xrcc1 - ENSRNOG00000019915 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000019915
NameXrcc1
DescriptionX-ray repair complementing defective repair in Chinese hamster cells 1 [Source:RGD Symbol;Acc:619823]
OrganismRattus norvegicus (rat)
Synonym(s)q6irj9, xrcc-1
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.83e3
  • 1.83e3
93.34
  • 93.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.16e3
  • 2.16e3
92.15
  • 92.15
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.55e3
  • 2.55e3
90.72
  • 90.72
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.65e3
  • 2.65e3
  • 3.44e3
90.36
  • 90.36
  • 87.47
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.75e3
  • 2.75e3
90.00
  • 90.00
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.76e3
  • 2.76e3
89.96
  • 89.96
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.81e3
  • 2.81e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.24e3
  • 3.24e3
88.21
  • 88.21
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
3.35e3
  • 3.35e3
87.79
  • 87.79
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.40e3
  • 3.40e3
87.63
  • 87.63
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
3.49e3
  • 3.49e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.56e3
  • 3.56e3
  • 6.75e3
87.04
  • 87.04
  • 75.41
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.61e3
  • 3.61e3
86.86
  • 86.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
3.93e3
  • 3.93e3
85.70
  • 85.70
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
4.36e3
  • 4.36e3
84.13
  • 84.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.54e3
  • 4.54e3
  • 4.64e3
  • 5.33e3
83.45
  • 83.45
  • 83.09
  • 80.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.55e3
  • 4.55e3
83.43
  • 83.43
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.40e3
  • 5.40e3
80.32
  • 80.32
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
6.20e3
  • 6.20e3
77.43
  • 77.43
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.27e3
  • 6.27e3
77.15
  • 77.15
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
  • 1.25e4
55.28
  • 55.28
  • 54.51
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000019915.

Cross-references

EnsemblENSRNOG00000019915 (Xrcc1)
RGD619823 (Xrcc1)
EMBLAF290895, BC070894
Uniprot/SWISSPROTQ9ESZ0, XRCC1_RAT

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