R. norvegicus Gene: Trim8 - ENSRNOG00000019968 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000019968
NameTrim8
Descriptiontripartite motif-containing 8 [Source:RGD Symbol;Acc:1585223]
OrganismRattus norvegicus (rat)
Synonym(s)loc308181, loc688785
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.58e3
  • 2.58e3
90.62
  • 90.62
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.93e3
  • 2.93e3
  • 3.63e3
89.33
  • 89.33
  • 86.77
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.09e3
  • 3.09e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.15e3
  • 3.15e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.56e3
  • 3.56e3
  • 5.23e3
87.03
  • 87.03
  • 80.96
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
3.83e3
  • 3.83e3
86.06
  • 86.06
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.32e3
  • 4.32e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.33e3
  • 4.33e3
84.22
  • 84.22
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.86e3
  • 4.86e3
82.30
  • 82.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.93e3
  • 4.93e3
82.06
  • 82.06
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
4.93e3
  • 4.93e3
82.04
  • 82.04
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.02e3
  • 5.02e3
81.73
  • 81.73
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.23e3
  • 5.23e3
80.94
  • 80.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
5.38e3
  • 5.38e3
  • 6.07e3
  • 6.35e3
80.42
  • 80.42
  • 77.90
  • 76.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.77e3
  • 5.77e3
78.99
  • 78.99
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.91e3
  • 5.91e3
78.49
  • 78.49
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.08e3
  • 6.08e3
77.87
  • 77.87
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
6.20e3
  • 6.20e3
77.42
  • 77.42
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
6.39e3
  • 6.39e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.49e3
  • 6.49e3
76.38
  • 76.38
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
9.44e3
  • 9.44e3
  • 9.48e3
65.61
  • 65.61
  • 65.48
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
  • 1.55e4
51.88
  • 51.88
  • 43.56
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000019968.

Cross-references

EnsemblENSRNOG00000019968 (Trim8)
RGD1585223 (Trim8)
EMBLAC097694
Uniprot/SPTREMBLD3ZQE3, D3ZQE3_RAT

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