R. norvegicus Gene: Rin1 - ENSRNOG00000020133 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000020133
NameRin1
DescriptionRas and Rab interactor 1 [Source:RGD Symbol;Acc:620006]
OrganismRattus norvegicus (rat)
Synonym(s)eco:0000313|rgd:6491077}, rin1 {eco:0000313|embl:edm12450.1,gn eco:0000313|ensembl:ensrnop00000027335
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
  • 2.21e4
37.41
  • 37.41
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.65
  • 35.65
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.80e4
  • 1.80e4
34.46
  • 34.46
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.88e4
  • 1.88e4
31.65
  • 31.65
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.91e4
  • 1.91e4
30.54
  • 30.54
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.93e4
  • 1.93e4
29.68
  • 29.68
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.95e4
  • 1.95e4
28.86
  • 28.86
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
2.01e4
  • 2.01e4
  • 2.21e4
26.78
  • 26.78
  • 19.56
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.04e4
  • 2.04e4
25.82
  • 25.82
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.07e4
  • 2.07e4
24.63
  • 24.63
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.10e4
  • 2.10e4
23.52
  • 23.52
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.16e4
  • 2.16e4
21.29
  • 21.29
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.16e4
  • 2.16e4
21.14
  • 21.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.21e4
  • 2.21e4
  • 2.26e4
19.63
  • 19.63
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.35e4
  • 2.35e4
14.46
  • 14.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000020133.

Cross-references

EnsemblENSRNOG00000020133 (Rin1)
RGD620006 (Rin1), 6491077 (LOC100911794)
EMBLAABR07006104, AABR07006106, CH473953
Uniprot/SPTREMBLG3V8P7, G3V8P7_RAT

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