R. norvegicus Gene: Tgm1 - ENSRNOG00000020136 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000020136
NameTgm1
Descriptiontransglutaminase 1 [Source:RGD Symbol;Acc:61838]
OrganismRattus norvegicus (rat)
Synonym(s)q4qra6, tg(k), tgase k, tgase-1, tgk

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.47e3
  • 1.47e3
94.63789
  • 94.63789
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
7.97e3
  • 7.97e3
70.93026
  • 70.93026
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
9.86e3
  • 9.86e3
64.03895
  • 64.03895
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
  • 1.25e4
60.89787
  • 60.89787
  • 54.53492
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
  • 1.21e4
60.56826
  • 60.56826
  • 55.76493
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
57.05099
  • 57.05099
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
52.23850
  • 52.23850
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
51.86603
  • 51.86603
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
  • 1.78e4
48.38969
  • 48.38969
  • 35.18189
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
45.73907
  • 45.73907
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.32670
  • 45.32670
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.38254
  • 44.38254
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.37028
  • 44.37028
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.10231
  • 44.10231
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.59667
  • 43.59667
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.39209
  • 43.39209
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
42.34198
  • 42.34198
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.54029
  • 40.54029
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
  • 1.84e4
39.37407
  • 39.37407
  • 32.83394
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.69439
  • 38.69439
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.83e4
  • 1.83e4
33.23121
  • 33.23121
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC097305, M57263
EnsemblENSRNOG00000020136 (Tgm1)
RGD61838 (Tgm1)
Uniprot/SWISSPROTP23606, TGM1_RAT

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