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R. norvegicus Gene: Syt11 - ENSRNOG00000020279 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000020279
NameSyt11
Descriptionsynaptotagmin XI [Source:RGD Symbol;Acc:62042]
OrganismRattus norvegicus (rat)
Synonym(s)q925b6
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
284
  • 284
  • 501
98.97
  • 98.97
  • 98.18
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
403
  • 403
  • 423
98.53
  • 98.53
  • 98.46
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
619
  • 619
97.75
  • 97.75
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
6.59e3
  • 6.59e3
  • 6.77e3
75.98
  • 75.98
  • 75.34
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.81e3
  • 8.81e3
67.90
  • 67.90
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
9.72e3
  • 9.72e3
64.60
  • 64.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
  • 1.47e4
62.59
  • 62.59
  • 46.56
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.36
  • 61.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.31
  • 61.31
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
59.41
  • 59.41
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.33
  • 59.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.17
  • 59.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
58.56
  • 58.56
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.45
  • 56.45
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.29
  • 56.29
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.04
  • 55.04
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.79
  • 54.79
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.75
  • 54.75
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
52.42
  • 52.42
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
  • 1.41e4
51.06
  • 51.06
  • 48.70
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000020279.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000020279.

Cross-references

EnsemblENSRNOG00000020279 (Syt11)
RGD62042 (Syt11)
EMBLAC097294, AF000423, AF375465, CH473976
Uniprot/SPTREMBLF7F2C5, F7F2C5_RAT
Uniprot/SWISSPROTO08835, SYT11_RAT

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