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R. norvegicus Gene: Scn1b - ENSRNOG00000021102 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000021102
NameScn1b
Descriptionsodium channel, voltage-gated, type I, beta subunit [Source:RGD Symbol;Acc:3631]
OrganismRattus norvegicus (rat)
Synonym(s)q505j0
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
109
  • 109
99.61
  • 99.61
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
172
  • 172
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
216
  • 216
99.22
  • 99.22
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
300
  • 300
  • 411
98.91
  • 98.91
  • 98.50
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
467
  • 467
98.30
  • 98.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
841
  • 841
96.94
  • 96.94
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.80e3
  • 1.80e3
  • 1.87e3
93.45
  • 93.45
  • 93.20
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.44e3
  • 2.44e3
91.12
  • 91.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
2.74e3
  • 2.74e3
  • 4.58e3
  • 5.46e3
90.03
  • 90.03
  • 83.34
  • 80.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.28e3
  • 3.28e3
88.04
  • 88.04
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
5.88e3
  • 5.88e3
78.58
  • 78.58
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
7.15e3
  • 7.15e3
73.95
  • 73.95
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.66e3
  • 8.66e3
68.45
  • 68.45
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
8.75e3
  • 8.75e3
68.12
  • 68.12
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.68e3
  • 9.68e3
64.73
  • 64.73
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
9.88e3
  • 9.88e3
64.02
  • 64.02
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
62.46
  • 62.46
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
  • 1.30e4
56.95
  • 56.95
  • 52.56
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.80
  • 48.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000021102.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000021102.

Cross-references

EnsemblENSRNOG00000021102 (Scn1b)
RGD3631 (Scn1b)
EMBLAABR07071898, BC094523, M91808
Uniprot/SPTREMBLA0A0G2JXY6, A0A0G2JXY6_RAT
Uniprot/SWISSPROTQ00954, SCN1B_RAT

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