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R. norvegicus Gene: Vps16 - ENSRNOG00000021222 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000021222
NameVps16
Descriptionvacuolar protein sorting 16 homolog (S. cerevisiae) [Source:RGD Symbol;Acc:1359414]
OrganismRattus norvegicus (rat)
Synonym(s)mgc94090
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.57e3
  • 2.57e3
  • 4.34e3
90.63
  • 90.63
  • 84.21
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.85e3
  • 2.85e3
89.62
  • 89.62
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
2.86e3
  • 2.86e3
89.57
  • 89.57
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.27e3
  • 3.27e3
88.07
  • 88.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.48e3
  • 3.48e3
  • 4.44e3
87.32
  • 87.32
  • 83.83
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.69e3
  • 3.69e3
86.57
  • 86.57
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.33e3
  • 4.33e3
84.25
  • 84.25
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
4.43e3
  • 4.43e3
  • 4.49e3
  • 4.53e3
83.87
  • 83.87
  • 83.65
  • 83.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
4.47e3
  • 4.47e3
83.72
  • 83.72
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.58e3
  • 4.58e3
  • 4.68e3
83.31
  • 83.31
  • 82.95
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.62e3
  • 4.62e3
83.16
  • 83.16
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.70e3
  • 4.70e3
82.89
  • 82.89
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.01e3
  • 5.01e3
81.77
  • 81.77
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
5.07e3
  • 5.07e3
81.52
  • 81.52
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.33e3
  • 5.33e3
80.59
  • 80.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.39e3
  • 5.39e3
80.36
  • 80.36
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
5.63e3
  • 5.63e3
79.48
  • 79.48
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.83e3
  • 5.83e3
78.76
  • 78.76
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.84e3
  • 5.84e3
78.72
  • 78.72
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.01e3
  • 6.01e3
78.11
  • 78.11
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 1.29e4
53.18
  • 53.18
  • 53.11
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000021222.

Cross-references

EnsemblENSRNOG00000021222 (Vps16)
RGD1359414 (Vps16)
EMBLAABR07053738, BC081963, CH473949
Uniprot/SPTREMBLQ642A9, Q642A9_RAT

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