R. norvegicus Gene: Zfp541 - ENSRNOG00000021800 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000021800
NameZfp541
Descriptionzinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
OrganismRattus norvegicus (rat)
Synonym(s)loc308108, znf541
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.08e3
  • 2.08e3
  • 4.10e3
92.43
  • 92.43
  • 85.06
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
  • 1.80e4
48.08
  • 48.08
  • 34.37
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.74
  • 41.74
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
41.47
  • 41.47
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.69e4
  • 1.69e4
38.53
  • 38.53
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.63
  • 35.63
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.78e4
  • 1.78e4
35.14
  • 35.14
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.78e4
  • 1.78e4
  • 1.79e4
35.12
  • 35.12
  • 34.96
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.82e4
  • 1.82e4
33.66
  • 33.66
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
32.52
  • 32.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000021800.

Cross-references

EnsemblENSRNOG00000021800 (Zfp541)
RGD1310756 (Zfp541)
EMBLAABR07002626
Uniprot/SPTREMBLD3Z8I0, D3Z8I0_RAT

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