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R. norvegicus Gene: Trim17 - ENSRNOG00000022983 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000022983
NameTrim17
Descriptiontripartite motif-containing 17 [Source:RGD Symbol;Acc:69290]
OrganismRattus norvegicus (rat)
Synonym(s)rnf16, terf
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.10e3
  • 1.10e3
  • 1.22e3
95.99
  • 95.99
  • 95.56
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.78e3
  • 9.78e3
64.36
  • 64.36
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
61.87
  • 61.87
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.81
  • 60.81
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.31
  • 59.31
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.16e4
58.56
  • 58.56
  • 57.73
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
56.94
  • 56.94
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.21
  • 56.21
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.21e4
  • 1.21e4
  • 1.28e4
  • 1.48e4
55.86
  • 55.86
  • 53.44
  • 46.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.13
  • 55.13
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.60
  • 53.60
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.76
  • 52.76
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
51.31
  • 51.31
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.40
  • 49.40
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
48.25
  • 48.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSRNOG00000022983 (Trim17)
RGD69290 (Trim17)
EMBLAC099089, AF156272, BC078819
Uniprot/SPTREMBLA0A0H2UI13, A0A0H2UI13_RAT
Uniprot/SWISSPROTQ9WV59, TRI17_RAT

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