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R. norvegicus Gene: Smim8 - ENSRNOG00000023035 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000023035
NameSmim8
Descriptionsmall integral membrane protein 8 [Source:RGD Symbol;Acc:1305158]
OrganismRattus norvegicus (rat)
Synonym(s)loc297971, rgd1305158, rgd1305158 {eco:0000313|embl:aai67112.1,gn eco:0000313|rgd:1305158}, rgd1305158_predictedgn
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.10e3
  • 1.10e3
96.01
  • 96.01
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.44e3
  • 1.44e3
94.76
  • 94.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.55e3
  • 1.55e3
  • 2.59e3
  • 2.83e3
94.36
  • 94.36
  • 90.56
  • 89.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.76e3
  • 1.76e3
  • 2.92e3
93.59
  • 93.59
  • 89.37
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.26e3
  • 2.26e3
91.77
  • 91.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.40e3
  • 2.40e3
  • 6.77e3
91.28
  • 91.28
  • 75.36
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.40e3
  • 2.40e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
2.56e3
  • 2.56e3
90.69
  • 90.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.82e3
  • 2.82e3
89.72
  • 89.72
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.94e3
  • 2.94e3
89.31
  • 89.31
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.09e3
  • 3.09e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.20e3
  • 3.20e3
88.35
  • 88.35
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.32e3
  • 3.32e3
87.92
  • 87.92
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
3.35e3
  • 3.35e3
87.82
  • 87.82
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.64e3
  • 3.64e3
86.75
  • 86.75
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.64e3
  • 3.64e3
86.73
  • 86.73
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.85e3
  • 3.85e3
85.99
  • 85.99
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.92e3
  • 3.92e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.07e3
  • 4.07e3
  • 6.55e3
85.19
  • 85.19
  • 76.15
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.27e3
  • 4.27e3
84.46
  • 84.46
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.88e3
  • 5.88e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
  • 1.39e4
49.48
  • 49.48
  • 49.31
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000023035.

Cross-references

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