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R. norvegicus Gene: Pnldc1 - ENSRNOG00000023140 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000023140
NamePnldc1
Descriptionpoly(A)-specific ribonuclease (PARN)-like domain containing 1 [Source:RGD Symbol;Acc:1308678]
OrganismRattus norvegicus (rat)
Synonym(s)e9pu60, loc361478, mgc116282
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.70e3
  • 3.70e3
  • 5.48e3
86.54
  • 86.54
  • 80.06
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.70e3
  • 9.70e3
  • 1.55e4
64.68
  • 64.68
  • 43.53
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.03e4
  • 1.03e4
  • 1.33e4
  • 1.35e4
62.62
  • 62.62
  • 51.45
  • 50.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.12
  • 54.12
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.05
  • 54.05
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
53.95
  • 53.95
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
53.00
  • 53.00
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
51.34
  • 51.34
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
50.82
  • 50.82
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
50.78
  • 50.78
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.63
  • 50.63
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.66
  • 49.66
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.53
  • 49.53
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
48.22
  • 48.22
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.61
  • 47.61
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.90
  • 46.90
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
  • 1.53e4
46.50
  • 46.50
  • 44.40
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
45.88
  • 45.88
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
45.80
  • 45.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000023140.

Cross-references

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