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R. norvegicus Gene: Fam78a - ENSRNOG00000023352 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000023352
NameFam78a
Descriptionfamily with sequence similarity 78, member A [Source:RGD Symbol;Acc:1566351]
OrganismRattus norvegicus (rat)
Synonym(s)loc499776, rgd1566351
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.42e3
  • 1.42e3
  • 1.56e3
94.81
  • 94.81
  • 94.31
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.77e3
  • 2.77e3
89.91
  • 89.91
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.57e3
  • 3.57e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.95e3
  • 3.95e3
85.61
  • 85.61
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.73e3
  • 6.73e3
75.49
  • 75.49
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.99e3
  • 7.99e3
70.90
  • 70.90
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
8.15e3
  • 8.15e3
70.30
  • 70.30
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
8.27e3
  • 8.27e3
69.88
  • 69.88
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
9.53e3
  • 9.53e3
65.30
  • 65.30
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
60.04
  • 60.04
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
58.45
  • 58.45
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
  • 1.31e4
55.50
  • 55.50
  • 52.46
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.32
  • 54.32
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
53.21
  • 53.21
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
50.86
  • 50.86
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
  • 1.47e4
48.57
  • 48.57
  • 46.37
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
48.19
  • 48.19
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
46.45
  • 46.45
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.50
  • 45.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000023352.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000023352.

Cross-references

EnsemblENSRNOG00000023352 (Fam78a)
RGD1566351 (Fam78a)
EMBLAABR07051435
Uniprot/SPTREMBLD3ZW92, D3ZW92_RAT

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