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R. norvegicus Gene: Lrrc8a - ENSRNOG00000025296 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000025296
NameLrrc8a
Descriptionleucine rich repeat containing 8 family, member A [Source:RGD Symbol;Acc:1311690]
OrganismRattus norvegicus (rat)
Synonym(s)loc311846, lrrc8
Orthologs(s)19 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.58e3
  • 3.58e3
  • 5.62e3
86.97
  • 86.97
  • 79.52
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.78e3
  • 3.78e3
  • 9.23e3
86.24
  • 86.24
  • 66.38
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.85e3
  • 3.85e3
85.99
  • 85.99
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.21e3
  • 4.21e3
84.65
  • 84.65
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.84e3
  • 4.84e3
82.38
  • 82.38
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.99e3
  • 4.99e3
81.83
  • 81.83
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.08e3
  • 5.08e3
81.49
  • 81.49
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.10e3
  • 5.10e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
5.23e3
  • 5.23e3
  • 6.05e3
  • 6.95e3
80.94
  • 80.94
  • 77.95
  • 74.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
5.53e3
  • 5.53e3
79.86
  • 79.86
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.74e3
  • 5.74e3
79.10
  • 79.10
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.21e3
  • 6.21e3
77.38
  • 77.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.39e3
  • 6.39e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
6.42e3
  • 6.42e3
76.63
  • 76.63
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
6.82e3
  • 6.82e3
75.16
  • 75.16
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
7.61e3
  • 7.61e3
72.28
  • 72.28
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
7.76e3
  • 7.76e3
71.75
  • 71.75
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
7.93e3
  • 7.93e3
71.13
  • 71.13
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
9.01e3
  • 9.01e3
67.17
  • 67.17
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
  • 1.20e4
60.91
  • 60.91
  • 56.12
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
  • 1.58e4
42.75
  • 42.75
  • 42.57
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000025296.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000025296.

Cross-references

EnsemblENSRNOG00000025296 (Lrrc8a)
RGD1311690 (Lrrc8a)
EMBLBC097371
Uniprot/SWISSPROTLRC8A_RAT, Q4V8I7

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