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R. norvegicus Gene: RGD1311892 - ENSRNOG00000025948 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000025948
NameRGD1311892
Descriptionsimilar to hypothetical protein FLJ10901 [Source:RGD Symbol;Acc:1311892]
OrganismRattus norvegicus (rat)
Synonym(s)loc289399, rgd1311892_predicted
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.02e3
  • 2.02e3
  • 1.14e4
92.64
  • 92.64
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.97e3
  • 3.97e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.48e3
  • 4.48e3
83.69
  • 83.69
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.51e3
  • 4.51e3
83.57
  • 83.57
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
5.54e3
  • 5.54e3
79.82
  • 79.82
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
7.75e3
  • 7.75e3
71.76
  • 71.76
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.01e3
  • 8.01e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.29e3
  • 9.29e3
66.18
  • 66.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
62.85
  • 62.85
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
  • 1.53e4
61.57
  • 61.57
  • 44.16
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
  • 1.16e4
  • 1.25e4
61.15
  • 61.15
  • 57.60
  • 54.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.22
  • 59.22
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
52.95
  • 52.95
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
  • 1.56e4
46.64
  • 46.64
  • 43.13
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.67
  • 41.67
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
41.21
  • 41.21
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
41.14
  • 41.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.66e4
  • 1.66e4
39.45
  • 39.45
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.04e4
  • 2.04e4
25.77
  • 25.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000025948.

Cross-references

EnsemblENSRNOG00000025948 (RGD1311892)
RGD1311892 (RGD1311892)
EMBLAABR07021006, CH473958
Uniprot/SPTREMBLD3ZL84, D3ZL84_RAT

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