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R. norvegicus Gene: LOC688739 - ENSRNOG00000027656 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000027656
NameLOC688739
Descriptionsimilar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Source:RGD Symbol;Acc:1585269]
OrganismRattus norvegicus (rat)
Orthologs(s)1 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
36.78
  • 36.78
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.90e4
  • 1.90e4
30.85
  • 30.85
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
2.15e4
  • 2.15e4
21.59
  • 21.59
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.21e4
  • 2.21e4
  • 2.34e4
19.54
  • 19.54
  • 14.88
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.26e4
  • 2.26e4
17.59
  • 17.59
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.36e4
  • 2.36e4
13.86
  • 13.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSRNOG00000027656.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000027656.

Cross-references

EnsemblENSRNOG00000027656 (LOC688739)
RGD1585269 (LOC688739)
EMBLAABR07034329
Uniprot/SPTREMBLF1M2E0, F1M2E0_RAT

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